Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPA1925Putative transmembrane protein. (488 aa)    
Predicted Functional Partners:
rmrA
Putative hlyD family multidrug secretion protein; Citation: Gonzalez-Pasayo and Martinez-Romero (2000) Mol. Plant Microbe Interact. 13:572-577.
 
 
 0.693
RPA3543
Possible multidrug resistance efflux pump.
 
 
 0.676
emrA
Putative multidrug resistance protein.
 
 
 0.675
RPA1926
Possible transcriptional regulator, XRE family.
 
   
 0.653
RPA0515
Possible efflux pump protein FarA.
 
 
 0.640
RPA3516
Possible bcr efflux pump, Major Facilitator Superfamily (MFS).
  
   
 0.636
RPA2878
Possible MDR related permease.
  
   
 0.584
RPA0935
Conserved hypothetical protein; InterPro IPR000379 COGs COG1073.
   
    0.550
RPA1924
Cobalamin synthesis protein/P47K.
       0.425
RPA1648
Membrane permeases, predicted cation efflux pumps; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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