Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
RPA1930Two-component transcriptional regulator, winged helix family. (241 aa)    
Predicted Functional Partners:
RPA1932
Sensor histidine kinase.
 
 0.940
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.892
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
 
 
 0.844
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
  
 
 0.797
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.797
RPA1558
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
  
 
 0.797
nuoCD
NADH-ubiquinone dehydrogenase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.758
phoR
Two component sensor histidine kinase phoR.
 
 0.728
RPA3571
Two component sensor histidine kinase.
 
 
 0.723
RPA2367
Two component sensor histidine kinase, possible AdeS.
 
 0.709
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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