STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1970Conserved hypothetical protein; InterPro IPR001969 COGs COG3577. (178 aa)    
Predicted Functional Partners:
RPA1971
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.765
RPA1972
Sensor histidine kinase.
  
    0.724
GTA-8
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg12.
  
     0.473
RPA3545
Conserved hypothetical protein.
  
     0.473
RPA1892
Probable large terminase, Rhodobacter capsulatus GTA orfg2 homologue.
  
     0.450
RPA3127
NUDIX hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.446
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
  
   
 0.444
RPA1885
Putative portal protein, R. capsulatus GTA orfg3 homologue.
  
     0.433
RPA1973
3-hydroxyisobutyrate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.432
RPA1913
Conserved hypothetical protein.
  
     0.409
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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