STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1970Conserved hypothetical protein; InterPro IPR001969 COGs COG3577. (178 aa)    
Predicted Functional Partners:
RPA1971
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.768
RPA1972
Sensor histidine kinase.
  
    0.726
GTA-8
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg12.
  
     0.473
RPA3545
Conserved hypothetical protein.
  
     0.473
RPA1892
Probable large terminase, Rhodobacter capsulatus GTA orfg2 homologue.
  
     0.450
RPA3127
NUDIX hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.447
RPA1973
3-hydroxyisobutyrate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.436
RPA1885
Putative portal protein, R. capsulatus GTA orfg3 homologue.
  
     0.433
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
  
   
 0.431
RPA1913
Conserved hypothetical protein.
  
    0.410
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.