Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1972Sensor histidine kinase. (532 aa)    
Predicted Functional Partners:
RPA3133
Response regulator receiver (CheY-like protein).
 
 0.996
RPA3132
Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.
 0.991
RPA1938
Sensor histidine kinase, possible pleC.
 
 
0.933
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
 
 0.874
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
0.860
RPA0754
Putative signal transduction histidine kinase with PAS/PAC domains.
 
 
 0.821
RPA2369
Pseudogene-two-component transcriptional regulator, winged helix family.
 
 0.814
RPA3571
Two component sensor histidine kinase.
  
 
 
 0.809
RPA1248
Two-component transcriptional regulator, LuxR family.
 
 0.805
RPA1971
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.789
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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