STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1999GCN5-related N-acetyltransferase:Aminotransferase, class-II; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (167 aa)    
Predicted Functional Partners:
leuA
Putative isopropyl malate synthase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.865
RPA1998
Hypothetical protein.
  
    0.790
RPA3583
Conserved hypothetical protein; InterPro IPR000104:IPR001687.
   
 
 0.535
RPA0920
GCN5-related N-acetyltransferase.
  
     0.501
aro
Chorismate mutase.
 
     0.496
RPA3476
Possible energy transducer TonB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.477
RPA0249
Hypothetical protein; InterPro IPR000104:IPR000694.
 
     0.469
RPA2001
Putative acetolactate synthase large subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.468
RPA2457
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.454
RPA3944
Conserved hypothetical protein; COGs COG0392.
 
     0.453
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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