Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2003Probable cytochrome c precursor. (689 aa)    
Predicted Functional Partners:
soxC
Sulfite dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.985
soxZ1
Putative sulfur oxidation protein.
    
 0.935
soxZ2
Putative sulfur oxidation protein soxZ; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.935
soxY2
Putative sulfur oxidation protein soxY; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.935
RPA4463
Possible cytochrome; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.934
soxB
Sulfur/thiosulfate oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
    
 0.934
RPA4468
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.934
RPA4469
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.934
RPA3613
Putative thiosulfate sulfurtransferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.928
RPA3188
Alcohol dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.915
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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