Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dctP1TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (334 aa)    
Predicted Functional Partners:
dctM1
TrapT family, dctM subunit, C4-dicarboxylate transport.
 
 0.999
dctQ1
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
 
  
 0.984
RPA1782
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.964
RPA2541
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
 0.960
RPA2543
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
0.945
RPA1975
Periplasmic mannitol-binding protein, SmoM; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
 
 0.940
RPA4556
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.928
dctP2
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.922
dctQ2
TrapT dctQ-M fusion permease, dicarboxylate transport.
  
 0.910
RPA1784
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
 0.888
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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