Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nosLPutative nosL (possibly a disulfide isomerase). (183 aa)    
Predicted Functional Partners:
nosD
Putative periplasmic ABC transport copper binding protein.
 
  
 0.995
nosY
Putative NosY protein, possible ABC permease.
 
  
 0.992
nosR
Regulatory protein NosR.
 
  
 0.983
nosF
Putative NosF protein (an ABC transporter).
 
  
 0.983
nosZ
Nitrous-oxide reductase precursor NosZ; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
  
 0.981
nosX
Putative nosX; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
   
 0.971
norD
Dinitrification protein NorD.
 
    0.867
rimO
Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
      
 0.740
norB
Nitric-oxide reductase subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.685
bamD
Protein of unknown function UPF0169; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.663
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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