Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2101Conserved hypothetical protein; COGs COG1574. (626 aa)    
Predicted Functional Partners:
RPA2102
Conserved hypothetical protein.
     0.978
RPA2104
Conserved hypothetical protein.
 
    0.921
RPA2100
Possible hydrolase.
 
     0.869
RPA2103
Conserved hypothetical protein.
  
    0.788
RPA2099
Putative diterpenoid Major Facilitator Superfamily (MFS) transporter.
 
    0.692
RPA0104
Amidohydrolase.
  
    0.551
RPA2105
Non-heme chloroperoxidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.511
RPA4491
Conserved hypothetical protein; InterPro IPR001343 COGs COG3210.
  
     0.458
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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