Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA2109Two-component transcriptional regulator, LuxR family. (211 aa)    
Predicted Functional Partners:
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
 
 0.927
RPA1313
Sensor histidine kinase with multiple PAS/PAC domains.
 
 
 0.828
RPA2292
Sensor histidine kinase.
 
 0.807
fixL
Two component low oxygen sensor histidine kinase with PAS domains, fixL; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.777
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
 
 0.759
RPA2108
Response regulator receiver (CheY-like protein).
 
    
0.611
RPA1328
Sensor histidine kinase with a GAF and an unknown domain.
 
 
 0.553
kdpE
Two-component osmotic transcriptional regulator kdpE, winged helix family.
  
  
 0.525
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
   
 
 0.501
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 
 0.486
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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