STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtBPossible nitrate transport system permease protein. (279 aa)    
Predicted Functional Partners:
nrtC1
Putative nitrate transport system ATP-binding protein.
 
 0.997
nrtA
Putative nitrate transporter component, nrtA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.993
cynS
Putative cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
 
  
 0.902
RPA3707
Possible nitrate transporter component, nrtA.
  
 0.880
RPA2679
Putative transport system ATP-binding protein.
  
 0.854
RPA1364
Sulfate ester transport system ATP-binding protein.
  
 0.846
RPA4163
Putative taurine transport system ATP-binding protein.
  
 0.823
RPA2633
Putative ATP-binding protein of ABC transporter, possibly for nitrate.
  
 0.792
RPA2622
Putative sulfonate transport system, ATP-binding protein. Subunit of ABC transporter; Citation: Beil et al. (1995) Eur. J. Biochem. 229:385-394.
  
 0.780
RPA0883
ABC transporter, ATP-binding protein.
  
 0.770
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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