Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2116Hypothetical protein. (138 aa)    
Predicted Functional Partners:
RPA2117
Putative flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
 
  
 0.956
RPA2346
Hypothetical protein; InterPro IPR006311.
  
     0.693
RPA4634
Hypothetical protein.
  
     0.626
RPA1134
Conserved hypothetical protein.
  
     0.539
RPA2120
Putative hemin binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.478
RPA1389
Conserved hypothetical protein; InterPro IPR000276 COGs COG1840.
  
     0.465
RPA2119
Putative permease protein of ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.461
RPA2121
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.458
RPA1390
Conserved hypothetical protein; InterPro IPR001687 COGs COG0378.
  
     0.450
RPA1391
Possible ABC transporter ATP-binding protein.
  
     0.449
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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