Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2132Hypothetical protein. (461 aa)    
Predicted Functional Partners:
RPA2133
Conserved hypothetical protein.
 
    0.955
RPA3393
Conserved hypothetical protein.
 
     0.682
RPA2033
Possible AtsE.
  
     0.499
RPA2131
Hypothetical protein.
  
  
 0.499
RPA4223
Response regulator receiver (CheY-like protein) with unknown domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.494
RPA2134
Hypothetical protein.
       0.468
RPA0187
Conserved hypothetical protein.
  
     0.455
RPA3297
Possible branched-chain amino acid transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.449
RPA3295
Possible branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.419
GTA-6
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg10.1; translated by translational frameshift with GTA orfg10.
  
     0.410
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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