STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2136Possible cytochrome C precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (104 aa)    
Predicted Functional Partners:
ccoO,
Cytochrome-c oxidase fixO chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.828
ccoN,
Cytochrome-c oxidase fixN chain, heme and copper binding subunit; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.803
hydC
Hydrogenase gamma-fused hydrogenase large and small subunit.
    
   0.653
RPA3782
Putative rubredoxin reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.609
dhsU2
Putative flavocytochrome C sulfide dehydrogenase, flavoprotein subunit.
   
 
 0.609
dhsU1
Putative flavocytochrome C sulfide dehydrogenase, flavoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.609
RPA2003
Probable cytochrome c precursor.
  
 
 0.591
RPA2137
Probable acyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.522
RPA2135
Sensor histidine kinase with a response regulator receiver domain.
     
 0.520
RPA2069
Conserved hypothetical protein.
  
 
 0.494
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.