STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2152Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain. (709 aa)    
Predicted Functional Partners:
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 
 0.821
RPA3792
Putative diguanylate cyclase (GGDEF).
 
 0.811
RPA1642
Putative diguanylate cyclase (GGDEF).
 
 
 0.807
RPA1248
Two-component transcriptional regulator, LuxR family.
 
  
 0.789
RPA4790
Response regulator receiver:histidine kinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.781
RPA1180
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.669
amtB1
Ammonium transporter AmtB.
 
      0.593
RPA4830
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
  
 0.534
RPA2151
Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.532
RPA0529
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
0.519
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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