STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2172Putative oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
RPA2173
GCN5-related N-acetyltransferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.697
RPA3467
Probable UDP-glucose 4-epimerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    0.668
RPA2174
Conserved hypothetical protein; InterPro IPR001353 COGs COG3484.
       0.648
RPA3552
Putative short-chain dehydrogenase/reductase.
 
  
 0.618
ucpA
Putative oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.585
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
  
 0.553
RPA1737
Possible dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.522
RPA0896
Putative 3-oxoacyl-acyl carrier protein reductase.
 
  
 0.487
RPA1683
3-oxoacyl-acyl carrier protein reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.480
fabG1
Possible 3-oxoacyl-acyl carrier protein reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.456
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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