STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2176DUF403. (314 aa)    
Predicted Functional Partners:
RPA2175
Transglutaminase-like domain.
  
 0.991
RPA2177
DUF404; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    0.979
RPA2174
Conserved hypothetical protein; InterPro IPR001353 COGs COG3484.
 
    0.930
RPA3752
Transglutaminase-like domain.
  
 0.875
RPA3753
DUF404.
 
   
0.791
RPA3754
Transglutaminase-like domain.
 
  
 0.689
RPA1272
Transglutaminase-like domain.
 
  
 0.670
RPA3312
Transglutaminase-like domain.
 
  
 0.654
RPA2178
Possible competence damage protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.402
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.