Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPA0336 | RPA2182 | RPA0336 | RPA2182 | NADPH-dependent FMN reductase. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.484 |
RPA1377 | RPA1606 | RPA1377 | RPA1606 | Possible glyoxalase. | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.701 |
RPA1377 | RPA2182 | RPA1377 | RPA2182 | Possible glyoxalase. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.535 |
RPA1377 | RPA2523 | RPA1377 | RPA2523 | Possible glyoxalase. | Putative lactoylglutathione lyase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.920 |
RPA1576 | RPA1606 | RPA1576 | RPA1606 | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.473 |
RPA1576 | RPA2139 | RPA1576 | RPA2139 | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Possible glutathione S-transferase. | 0.538 |
RPA1576 | RPA2182 | RPA1576 | RPA2182 | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.774 |
RPA1576 | gstA3 | RPA1576 | RPA0023 | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Possible glutathione transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the GST superfamily. | 0.621 |
RPA1576 | rpoA | RPA1576 | RPA3226 | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.629 |
RPA1606 | RPA1377 | RPA1606 | RPA1377 | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | Possible glyoxalase. | 0.701 |
RPA1606 | RPA1576 | RPA1606 | RPA1576 | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.473 |
RPA1606 | RPA2182 | RPA1606 | RPA2182 | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.554 |
RPA1606 | RPA2523 | RPA1606 | RPA2523 | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. | Putative lactoylglutathione lyase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.508 |
RPA2139 | RPA1576 | RPA2139 | RPA1576 | Possible glutathione S-transferase. | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.538 |
RPA2139 | RPA2182 | RPA2139 | RPA2182 | Possible glutathione S-transferase. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.484 |
RPA2139 | rpoA | RPA2139 | RPA3226 | Possible glutathione S-transferase. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.629 |
RPA2181 | RPA2182 | RPA2181 | RPA2182 | Possible metE (5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Putative glutathione S-transferase; Belongs to the GST superfamily. | 0.573 |
RPA2182 | RPA0336 | RPA2182 | RPA0336 | Putative glutathione S-transferase; Belongs to the GST superfamily. | NADPH-dependent FMN reductase. | 0.484 |
RPA2182 | RPA1377 | RPA2182 | RPA1377 | Putative glutathione S-transferase; Belongs to the GST superfamily. | Possible glyoxalase. | 0.535 |
RPA2182 | RPA1576 | RPA2182 | RPA1576 | Putative glutathione S-transferase; Belongs to the GST superfamily. | Putative glutathione S-transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.774 |
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