Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA2216Hypothetical protein. (887 aa)    
Predicted Functional Partners:
RPA2215
Possible ATP-dependent exodeoxyribonuclease (subunit A).
 
 
 0.997
RPA0074
Possible exonuclease V and helicase activity based on COG assignment; Belongs to the helicase family. UvrD subfamily.
  
 
 0.957
RPA2214
Possible helicase.
 
     0.931
RPA2219
Possible ATPase.
 
  
 0.843
RPA2217
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.835
RPA2221
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.819
RPA2220
Conserved unknown protein; COGs COG1743.
 
     0.790
RPA2218
Possible ATP-dependent RNA helicase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.765
RPA2211
DEAD/DEAH box helicase:Helicase, C-terminal.
  
    0.598
RPA2212
Hypothetical protein.
  
    0.588
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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