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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbJPutative conjugal transfer protein trbJ. (247 aa)    
Predicted Functional Partners:
trbE1
Conjugal transfer protein trbE.
  
 0.965
trbG1
Probable conjugal transfer protein trbG.
 
  
 0.955
trbL
Putative CONJUGAL TRANSFER protein trbL.
 
  
 0.954
trbC1
Putative conjugal transfer protein; TrbC.
 
  
 0.954
trbI1
Possible trbI, a component on a type IV secretion system (Y10832).
 
  
 0.953
trbF1
Putative conjugal transfer protein trbF.
 
  
 0.953
trbD
Conjugal transfer protein trbD.
 
  
 0.953
RPA2223
Conserved hypothetical protein.
 
    0.951
trbB1
Conjugal transfer protein trbB.
 
  
 0.911
traG2
Plasmid transfer factor, traG protein.
 
  
 0.895
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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