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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbE1Conjugal transfer protein trbE. (815 aa)    
Predicted Functional Partners:
trbI1
Possible trbI, a component on a type IV secretion system (Y10832).
  
 0.984
trbG1
Probable conjugal transfer protein trbG.
 
  
 0.984
trbC1
Putative conjugal transfer protein; TrbC.
 
 0.969
trbJ
Putative conjugal transfer protein trbJ.
  
 0.965
trbF1
Putative conjugal transfer protein trbF.
 
  
 0.957
trbD
Conjugal transfer protein trbD.
 
  
 0.955
trbL
Putative CONJUGAL TRANSFER protein trbL.
 
  
 0.954
trbB1
Conjugal transfer protein trbB.
 
  
 0.945
RPA2223
Conserved hypothetical protein.
 
    0.940
trbI2
Putative conjugal transfer protein trbI.
  
 0.936
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.