Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2234Conserved hypothetical protein. (147 aa)    
Predicted Functional Partners:
traG2
Plasmid transfer factor, traG protein.
 
    0.953
RPA2236
Conserved hypothetical protein.
 
    0.904
trbD
Conjugal transfer protein trbD.
 
    0.893
trbE1
Conjugal transfer protein trbE.
 
    0.891
trbC1
Putative conjugal transfer protein; TrbC.
 
     0.886
trbJ
Putative conjugal transfer protein trbJ.
 
     0.885
trbL
Putative CONJUGAL TRANSFER protein trbL.
 
     0.884
trbF1
Putative conjugal transfer protein trbF.
 
     0.883
trbG1
Probable conjugal transfer protein trbG.
 
     0.882
trbI1
Possible trbI, a component on a type IV secretion system (Y10832).
 
     0.871
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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