Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2239Putative partition protein. (212 aa)    
Predicted Functional Partners:
RPA2240
Possible replication protein A.
   
 0.932
parB1
Chromosome partitioning protein, ParB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the ParB family.
 
 
 0.866
RPA2236
Conserved hypothetical protein.
    0.828
RPA2251
Putative plasmid stabilization protein.
 
 
 0.806
RPA2238
Conserved hypothetical protein.
 
     0.803
parB2
Possible ParB-like partioning protein; Belongs to the ParB family.
  
 
 0.647
RPA2209
ParB-like nuclease.
  
 
 0.635
RPA4131
Helix-turn-helix protein, CopG family.
 
    0.617
traG1
Plasmid transfer factor, traG.
 
   
 0.601
traG2
Plasmid transfer factor, traG protein.
 
  
 0.591
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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