Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2241Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
RPA2242
Conserved hypothetical protein.
 
   
 0.871
RPA2238
Conserved hypothetical protein.
 
     0.796
RPA4133
Conserved hypothetical protein.
 
   
 0.795
RPA2244
Conserved hypothetical protein.
 
     0.737
RPA2245
Hypothetical protein.
  
     0.725
RPA2251
Putative plasmid stabilization protein.
  
    0.715
RPA2247
Conserved hypothetical protein; InterPro IPR001687.
  
     0.704
RPA2248
Conserved hypothetical protein.
  
    0.702
RPA2236
Conserved hypothetical protein.
 
    0.690
RPA2240
Possible replication protein A.
 
     0.680
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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