Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA2282Conserved hypothetical protein; COGs COG3093. (103 aa)    
Predicted Functional Partners:
RPA2283
Putative proteic killer suppression protein {plasmid Rts1).
 
 
 
 0.964
RPA1291
Putative proteic killer suppression protein.
 
 
 
 0.905
RPA3826
Conserved hypothetical protein; COGs COG3657.
 
     0.551
vapC
Possible NtrR protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.519
RPA3162
Transcriptional regulator, XRE family.
 
   
 0.517
RPA2979
Conserved hypothetical protein.
 
     0.461
RPA2284
SugE homolog, probable drug efflux protein.
       0.458
RPA2820
DUF433.
  
     0.449
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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