STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2292Sensor histidine kinase. (474 aa)    
Predicted Functional Partners:
RPA1248
Two-component transcriptional regulator, LuxR family.
 
 
 0.829
fixJ
Two-component nitrogen fixation transcriptional regulator fixJ, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.825
RPA1315
Two-component transcriptional regulator, LuxR family.
 
 0.812
RPA2109
Two-component transcriptional regulator, LuxR family.
 
 0.807
RPA1327
Ser/Thr protein kinase.
 
    
 0.802
RPA1682
Ptwo-component transcriptional regulator, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.786
RPA4249
Response regulator receiver (CheY-like protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.786
RPA1314
Response regulator receiver (CheY-like protein).
 
 
 0.761
cheA1
Multidomain chemotaxis histidine kinase CheA1 (Hpt, CheA, & CheW domains).
     
 0.759
RPA2108
Response regulator receiver (CheY-like protein).
 
 
 0.728
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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