Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA2298Hypothetical protein. (184 aa)    
Predicted Functional Partners:
RPA3913
Conserved hypothetical protein.
 
  
 0.978
RPA2297
Conserved unknown protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.952
RPA3915
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.872
flgK2
Possible flagellar hook-associated protein 1 FlgK; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.866
RPA1263
Putative II.1 protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
    0.864
RPA3932
Probable flagellar hook protein flgE; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.857
RPA3888
Possible flagellar basal-body rod protein FlgB.
 
  
 0.830
RPA3930
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.829
RPA3168
Possible flgaellar switch protein FliN.
 
  
 0.815
fliE
Flagellar hook-basal body complex protein FliE.
 
  
 0.806
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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