Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2307Possible tonB-dependent receptor precursor. (775 aa)    
Predicted Functional Partners:
RPA1059
Probable outer membrane protein, TonB-dependent receptor.
 
  
 0.694
RPA2309
Putative iron chelatin ABC transporter, permease subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.692
RPA2308
Possible periplasmic iron siderophore binding protein of ABC transporter.
 
  
 0.625
RPA2310
Putative iron ABC transporter ATP-binding protein.
  
  
 0.578
RPA3338
Possible Condensation domain, peptide synthetase.
  
  
 0.563
RPA2129
Possible energy transducer TonB, C-terminal region.
 
 
 0.561
RPA1241
Possible tonB transport protein.
 
 
 0.556
RPA1346
Possible TonB protein, possible colicin J receptor.
 
 
 0.540
RPA1846
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.515
pchR
Putative transcriptional regulator PchR, AraC family.
 
  
 0.515
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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