Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gctAPossible glutaconate CoA-transferase, subunit A. (331 aa)    
Predicted Functional Partners:
gctB
Putative CoA transferase, small subunit B.
 0.999
RPA1030
Possible CoA transferase, subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.994
RPA4652
Possible CoA transferase, subunit B.
 
 0.994
RPA4155
3-oxoadipate CoA-transferase subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.953
RPA4651
Possible glutaconate CoA-transferase, subunit A; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.929
RPA1029
Possible CoA transferase, subunit A.
  
  
 
0.928
RPA2316
enoyl-CoA hydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.757
ligA
Protocatechuate 4,5-dioxygenase, alpha chain.
      
 0.740
ligB
Protocatechuate 4,5-dioxygenase, beta chain.
      
 0.740
phaC-2
Putative poly-beta-hydroxyalkanoate synthase.
      
 0.724
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.