Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fur-4Transcriptional regulator, FUR family; possible iron response regulator IRR; Belongs to the Fur family. (163 aa)    
Predicted Functional Partners:
pchR
Putative transcriptional regulator PchR, AraC family.
   
  
 0.752
pigA
Possible iron-starvation protein.
   
  
 0.743
RPA2443
Probable antioxidant protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.606
RPA2639
Probable L-2-amino-thiazoline-4-carboxylic acid hydrolase.
  
    0.591
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.565
RPA2764
CoA Binding Domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.558
exbB
Putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
     
 0.533
feoB
Ferrous iron transport protein B.
     
 0.513
RPA0858
ABC transporter, ATP-binding protein.
  
  
 0.496
RPA0859
ABC transporter, permease protein.
  
  
 0.465
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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