Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA2374Hypothetical protein; COGs COG1538. (68 aa)    
Predicted Functional Partners:
RPA2373
Possible outer membrane protein.
      0.908
mexA
Putative RND multidrug efflux membrane fusion protein MexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.839
mexB
RND multidrug efflux transporter MexB.
  
 
 0.828
RPA4131
Helix-turn-helix protein, CopG family.
   
    0.550
RPA0515
Possible efflux pump protein FarA.
  
 
 0.538
RPA1648
Membrane permeases, predicted cation efflux pumps; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.538
RPA3543
Possible multidrug resistance efflux pump.
  
 
 0.538
emrA
Putative multidrug resistance protein.
  
 
 0.538
rmrA
Putative hlyD family multidrug secretion protein; Citation: Gonzalez-Pasayo and Martinez-Romero (2000) Mol. Plant Microbe Interact. 13:572-577.
  
 
 0.538
RPA0681
Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.517
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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