Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2401Conserved unknown protein. (111 aa)    
Predicted Functional Partners:
RPA2400
Conserved hypothetical protein; COGs COG0811.
 
    0.989
RPA2399
CobN/Magnesium chelatase family.
 
    0.966
RPA2398
Iron siderophore uptake receptor family, probable Mg/Co uptake.
  
    0.778
bchH
Magnesium-protoporphyrin O-methyltransferase BchH subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.584
RPA2451
Putative N-acetylmuramoyl-L-alanine amidase.
   
    0.545
cobN
Putative cobaltochelatase subunit CobN.
 
    0.517
RPA0406
Conserved unknown protein.
 
    0.511
RPA2091
Hypothetical protein.
  
    0.427
rpmJ,
50S ribosomal protein L36; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
  
 0.410
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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