Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2404Probable transcriptional regulator, AraC family. (334 aa)    
Predicted Functional Partners:
RPA1321
Probable transcriptional regulator, AraC family.
 
 
 0.713
RPA2110
Probable transcriptional regulator, AraC family.
 
 
 0.690
RPA1078
Probable transcriptional regulator, AraC family.
 
 
 0.668
RPA1326
Probable transcriptional regulator, AraC family.
 
 
 0.656
draT2
NAD+ ADP-ribosyltransferase.
       0.566
RPA1058
Probable transcriptional regulator, AraC family.
 
 
 0.559
draG
Dinitrogenase reductase activating glycohydrolase.
       0.552
pchR
Putative transcriptional regulator PchR, AraC family.
 
 
 0.480
phnB
Conserved hypothetical protein; COGs COG2764.
 
    0.465
RPA1008
Probable transcriptional regulator, AraC family.
 
 
 0.426
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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