Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amiC1Putative aliphatic amidase expression-regulating protein, AmiC; Citation: EMBO J 1999 Oct 1;18(19):5175-86. (385 aa)    
Predicted Functional Partners:
RPA2409
Possible AmiR antitermination protein; Citation: EMBO J 1999 Oct 1;18(19):5175-86.
 
 
 0.977
RPA2411
Putative permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.919
RPA2412
Possible permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.900
RPA2413
Putative urea/short-chain amide transport system ATP-binding protein.
 
  
 0.874
RPA1252
Putative high-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.863
RPA3667
Possible permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.859
RPA1251
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.846
RPA3668
Putative ABC transporter system permease component, possible fused protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.838
RPA2410
Putative urea/short-chain amide transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
0.832
RPA2414
Putative urea/short-chain amide transport system ATP-binding protein.
 
  
 0.815
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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