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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2409Possible AmiR antitermination protein; Citation: EMBO J 1999 Oct 1;18(19):5175-86. (221 aa)    
Predicted Functional Partners:
RPA2410
Putative urea/short-chain amide transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.987
amiC1
Putative aliphatic amidase expression-regulating protein, AmiC; Citation: EMBO J 1999 Oct 1;18(19):5175-86.
 
 
 0.985
RPA2412
Possible permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.877
RPA2415
Acetamidase/Formamidase.
 
    0.871
RPA2411
Putative permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
     0.855
RPA2413
Putative urea/short-chain amide transport system ATP-binding protein.
 
  
 0.851
RPA1250
Amide-urea binding protein.
 
 
 0.823
RPA2414
Putative urea/short-chain amide transport system ATP-binding protein.
 
    0.819
RPA2416
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.811
RPA3669
Urea transport system substrate-binding protein; Citation: O'Hara et al. (1999) EMBO J. 18:5175-86 and Wilson et al. EMBO J. (1993) 12:3637-42; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.796
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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