Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2423Probable transcriptional regulator, AraC family. (312 aa)    
Predicted Functional Partners:
RPA2422
Family of unknown function ThiJ/PfpI.
 
    
0.726
RPA4280
Probable transcriptional regulator, AraC family.
 
 
 0.546
RPA1321
Probable transcriptional regulator, AraC family.
 
 
 0.518
rpoD
RNA polymerase sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.492
RPA0567
Probable transcriptional regulator, AraC family.
 
 
 0.483
RPA4664
CUPIN domain:transcriptional regulator, AraC family.
 
 
 0.458
RPA2707
Probable transcriptional regulator, AraC family.
 
 
 0.405
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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