Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifS1Putative cysteine desulfurase, nifS homolog. (390 aa)    
Predicted Functional Partners:
nifU
Putative nifU protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.997
RPA3392
Possible nifU homolog.
  
 0.983
RPA3653
Protein of unknown function UPF0033; Belongs to the sulfur carrier protein TusA family.
   
 0.983
moeB
Putative molybdenum cofactor biosynthesis protein.
   
 0.963
nifQ
Putative nitrogen fixation protein nifQ.
  
 0.945
RPA3613
Putative thiosulfate sulfurtransferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.930
nifS2
Nitrogenase cofactor synthesis protein nifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 
 
0.914
RPA2470
Protein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
 
 0.912
dnaK
Heat shock protein DnaK (70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.879
badM
Putative transcriptional regulator, badM.
  
  
 0.860
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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