Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2471Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (654 aa)    
Predicted Functional Partners:
RPA2472
Hypothetical protein; InterPro IPR000104.
 
     0.956
RPA3643
Putative trehalose synthase.
   
    0.821
glgA1
Putative glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.776
RPA2473
Possible translation initiation inhibitor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.773
RPA3650
ATP-dependent DNA ligase.
  
    0.658
glgA2
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
    0.601
RPA2475
TfoX, N-terminal.
 
     0.592
RPA3633
Conserved hypothetical protein.
  
     0.571
RPA2474
Possible o-linked GlcNac transferase.
       0.545
RPA3311
Glycosyl hydrolase; Belongs to the glycosyl hydrolase 13 family.
   
    0.514
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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