Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA2478Probable transcriptional regulator, AraC family. (363 aa)    
Predicted Functional Partners:
RPA1321
Probable transcriptional regulator, AraC family.
 
 
 0.797
RPA2110
Probable transcriptional regulator, AraC family.
 
 
 0.795
RPA1326
Probable transcriptional regulator, AraC family.
 
 
 0.791
RPA1058
Probable transcriptional regulator, AraC family.
 
 
 0.721
pchR
Putative transcriptional regulator PchR, AraC family.
 
 
 0.634
RPA0878
Transcriptional regulator, AraC type; possible DNA gyrase inhibitor.
 
 
 0.627
RPA2479
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.501
RPA1008
Probable transcriptional regulator, AraC family.
 
 
 0.460
RPA2707
Probable transcriptional regulator, AraC family.
 
 
 0.453
RPA1078
Probable transcriptional regulator, AraC family.
 
 
0.420
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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