Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA2496Transcriptional regulator, GntR family. (232 aa)    
Predicted Functional Partners:
RPA2036
Possible transcriptional regulator, GntR family.
 
  
 0.787
RPA1946
Possible transcriptional regulator, GntR family.
  
    0.778
vanR
Transcriptional regulator VanR, GntR family.
  
    0.776
RPA2343
Transcriptional regulator, GntR family.
  
     0.774
RPA3444
Transcriptional regulator, GntR family.
  
     0.774
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family.
  
     0.419
ilvH
Acetolactate synthase (small subunit); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
    0.411
RPA2497
Putative anion ABC transporter, ATP-binding protein.
       0.402
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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