RPA2497 protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPA2497

Putative anion ABC transporter, ATP-binding protein. (262 aa)

Predicted Functional Partners:

RPA2498

0.974

RPA2499

0.938

nosF

0.914

RPA0573

0.911

RPA4162

0.885

RPA0882

0.876

RPA2678

0.875

cysT

0.868

RPA0468

0.862

RPA3383

0.862

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA0468	RPA2497	RPA0468	RPA2497	Putative ATP-binding protein of ABC transporter.	Putative anion ABC transporter, ATP-binding protein.	0.862
RPA0468	RPA2499	RPA0468	RPA2499	Putative ATP-binding protein of ABC transporter.	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.606
RPA0468	RPA3383	RPA0468	RPA3383	Putative ATP-binding protein of ABC transporter.	Possible taurine transport system permease protein.	0.757
RPA0573	RPA2497	RPA0573	RPA2497	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative anion ABC transporter, ATP-binding protein.	0.911
RPA0882	RPA2497	RPA0882	RPA2497	ABC transporter, permease.	Putative anion ABC transporter, ATP-binding protein.	0.876
RPA0882	RPA2499	RPA0882	RPA2499	ABC transporter, permease.	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.789
RPA2497	RPA0468	RPA2497	RPA0468	Putative anion ABC transporter, ATP-binding protein.	Putative ATP-binding protein of ABC transporter.	0.862
RPA2497	RPA0573	RPA2497	RPA0573	Putative anion ABC transporter, ATP-binding protein.	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.911
RPA2497	RPA0882	RPA2497	RPA0882	Putative anion ABC transporter, ATP-binding protein.	ABC transporter, permease.	0.876
RPA2497	RPA2498	RPA2497	RPA2498	Putative anion ABC transporter, ATP-binding protein.	Possible ABC transporter, permease protein.	0.974
RPA2497	RPA2499	RPA2497	RPA2499	Putative anion ABC transporter, ATP-binding protein.	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.938
RPA2497	RPA2678	RPA2497	RPA2678	Putative anion ABC transporter, ATP-binding protein.	Putative permease protein, subunit of ABC transporter.	0.875
RPA2497	RPA3383	RPA2497	RPA3383	Putative anion ABC transporter, ATP-binding protein.	Possible taurine transport system permease protein.	0.862
RPA2497	RPA4162	RPA2497	RPA4162	Putative anion ABC transporter, ATP-binding protein.	Putative taurine ABC transport system permease protein.	0.885
RPA2497	cysT	RPA2497	RPA0749	Putative anion ABC transporter, ATP-binding protein.	Putative sulfate ABC transporter, permease component; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.868
RPA2497	nosF	RPA2497	RPA2063	Putative anion ABC transporter, ATP-binding protein.	Putative NosF protein (an ABC transporter).	0.914
RPA2498	RPA2497	RPA2498	RPA2497	Possible ABC transporter, permease protein.	Putative anion ABC transporter, ATP-binding protein.	0.974
RPA2498	RPA2499	RPA2498	RPA2499	Possible ABC transporter, permease protein.	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.943
RPA2499	RPA0468	RPA2499	RPA0468	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative ATP-binding protein of ABC transporter.	0.606
RPA2499	RPA0882	RPA2499	RPA0882	Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	ABC transporter, permease.	0.789