Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2499Possible ABC transporter, periplasmic protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (325 aa)    
Predicted Functional Partners:
RPA2498
Possible ABC transporter, permease protein.
 
 
 0.943
RPA2497
Putative anion ABC transporter, ATP-binding protein.
 
 
 0.938
RPA0882
ABC transporter, permease.
 
 
 0.789
RPA2042
Putative ABC transporter, permease protein.
 
 
 0.785
RPA2041
ABC-transport protein, ATP-binding protein.
 
 
 0.683
RPA2500
Possible amidase.
 
     0.656
RPA0883
ABC transporter, ATP-binding protein.
 
 
 0.653
RPA3383
Possible taurine transport system permease protein.
 
 
 0.634
RPA2678
Putative permease protein, subunit of ABC transporter.
 
 
 0.619
RPA2623
Possible sulfonate transport system permease protein. Subunit of an ABC transporter.
 
 
 0.609
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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