Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
aapJ-1ABC transporter, periplasmic amino acid binding protein aapJ-1; Observed by proteomics; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; Belongs to the bacterial solute-binding protein 3 family. (338 aa)    
Predicted Functional Partners:
aapM-1
Polar amino acid ABC transport permease protein aapM-1; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52.
 
 0.996
aapP-1
Amino acid ABC transporter, ATP-binding protein aapP-1; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.996
aapQ-1
Polar amino acid ABC transport permease protein aapQ-1; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52.
 
 
 0.994
aapM-2
Polar amino acid ABC transport system protein, aapM-2; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52.
 
 0.976
aapQ-2
Polar amino acid ABC transpor permease protein, aapQ-2; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52.
 
 
 0.965
aapJ-2
Polar amino acid ABC transport substrate-binding protein, aapJ-2; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52.
  
  
 
0.906
RPA4797
ABC transporter, amino acid binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial solute-binding protein 3 family.
  
  
 
0.902
RPA3297
Possible branched-chain amino acid transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
  
 0.754
RPA4404
Putative periplasmic binding ABC transporter protein, probable sugar binding; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.754
cbbT2
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.638
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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