Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
RPA2641Putative ABC transporter oligopeptide-binding protein. (533 aa)    
Predicted Functional Partners:
RPA2645
Putative ABC transporter permease protein.
 
 0.906
RPA2646
Putative ABC transporter oligopeptide-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.902
RPA2644
Putative ABC transporter permease protein.
 
 0.901
RPA2639
Probable L-2-amino-thiazoline-4-carboxylic acid hydrolase.
 
     0.878
RPA2329
Putative ABC transporter permease protein.
 
 0.859
RPA2328
Putative ABC transporter permease protein.
 
 0.854
oppC
Putative ABC transporter permease protein.
 
 0.819
oppB
Putative dipeptide transport system permease protein 1.
 
 0.805
RPA1216
Putative ABC transporter, permease protein.
 
 0.780
RPA2640
Isochorismatase hydrolase family.
  
    0.779
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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