RPA2677 protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPA2677

Putative substrate-binding protein, subunit of ABC transporter. (318 aa)

Predicted Functional Partners:

RPA2678

0.973

RPA2679

0.947

RPA2611

0.887

RPA2623

0.883

RPA3383

0.878

RPA1363

0.874

RPA4162

0.870

RPA2632

0.814

RPA2498

0.806

nrtB

0.803

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA1363	RPA2677	RPA1363	RPA2677	Sulfate ester transport system permease protein.	Putative substrate-binding protein, subunit of ABC transporter.	0.874
RPA1363	RPA2679	RPA1363	RPA2679	Sulfate ester transport system permease protein.	Putative transport system ATP-binding protein.	0.879
RPA2498	RPA2677	RPA2498	RPA2677	Possible ABC transporter, permease protein.	Putative substrate-binding protein, subunit of ABC transporter.	0.806
RPA2498	RPA2679	RPA2498	RPA2679	Possible ABC transporter, permease protein.	Putative transport system ATP-binding protein.	0.850
RPA2611	RPA2677	RPA2611	RPA2677	Putative aliphatic sulfonate transport membrane component. Permease subunit of an ABC transporter; Citation: Van Der Ploeg et al. (1999) J. Biol. Chem. 274:29358-29365.	Putative substrate-binding protein, subunit of ABC transporter.	0.887
RPA2611	RPA2679	RPA2611	RPA2679	Putative aliphatic sulfonate transport membrane component. Permease subunit of an ABC transporter; Citation: Van Der Ploeg et al. (1999) J. Biol. Chem. 274:29358-29365.	Putative transport system ATP-binding protein.	0.837
RPA2623	RPA2677	RPA2623	RPA2677	Possible sulfonate transport system permease protein. Subunit of an ABC transporter.	Putative substrate-binding protein, subunit of ABC transporter.	0.883
RPA2623	RPA2679	RPA2623	RPA2679	Possible sulfonate transport system permease protein. Subunit of an ABC transporter.	Putative transport system ATP-binding protein.	0.861
RPA2632	RPA2677	RPA2632	RPA2677	ABC transport permease protein, possibly for nitrate.	Putative substrate-binding protein, subunit of ABC transporter.	0.814
RPA2632	RPA2679	RPA2632	RPA2679	ABC transport permease protein, possibly for nitrate.	Putative transport system ATP-binding protein.	0.865
RPA2677	RPA1363	RPA2677	RPA1363	Putative substrate-binding protein, subunit of ABC transporter.	Sulfate ester transport system permease protein.	0.874
RPA2677	RPA2498	RPA2677	RPA2498	Putative substrate-binding protein, subunit of ABC transporter.	Possible ABC transporter, permease protein.	0.806
RPA2677	RPA2611	RPA2677	RPA2611	Putative substrate-binding protein, subunit of ABC transporter.	Putative aliphatic sulfonate transport membrane component. Permease subunit of an ABC transporter; Citation: Van Der Ploeg et al. (1999) J. Biol. Chem. 274:29358-29365.	0.887
RPA2677	RPA2623	RPA2677	RPA2623	Putative substrate-binding protein, subunit of ABC transporter.	Possible sulfonate transport system permease protein. Subunit of an ABC transporter.	0.883
RPA2677	RPA2632	RPA2677	RPA2632	Putative substrate-binding protein, subunit of ABC transporter.	ABC transport permease protein, possibly for nitrate.	0.814
RPA2677	RPA2678	RPA2677	RPA2678	Putative substrate-binding protein, subunit of ABC transporter.	Putative permease protein, subunit of ABC transporter.	0.973
RPA2677	RPA2679	RPA2677	RPA2679	Putative substrate-binding protein, subunit of ABC transporter.	Putative transport system ATP-binding protein.	0.947
RPA2677	RPA3383	RPA2677	RPA3383	Putative substrate-binding protein, subunit of ABC transporter.	Possible taurine transport system permease protein.	0.878
RPA2677	RPA4162	RPA2677	RPA4162	Putative substrate-binding protein, subunit of ABC transporter.	Putative taurine ABC transport system permease protein.	0.870
RPA2677	nrtB	RPA2677	RPA2113	Putative substrate-binding protein, subunit of ABC transporter.	Possible nitrate transport system permease protein.	0.803