STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2677Putative substrate-binding protein, subunit of ABC transporter. (318 aa)    
Predicted Functional Partners:
RPA2678
Putative permease protein, subunit of ABC transporter.
 
  
 0.967
RPA2679
Putative transport system ATP-binding protein.
 
  
 0.935
RPA2611
Putative aliphatic sulfonate transport membrane component. Permease subunit of an ABC transporter; Citation: Van Der Ploeg et al. (1999) J. Biol. Chem. 274:29358-29365.
 
  
 0.859
RPA2623
Possible sulfonate transport system permease protein. Subunit of an ABC transporter.
 
  
 0.857
RPA3383
Possible taurine transport system permease protein.
 
  
 0.848
RPA1363
Sulfate ester transport system permease protein.
 
  
 0.837
RPA4162
Putative taurine ABC transport system permease protein.
 
  
 0.834
RPA2680
Conserved hypothetical protein; InterPro IPR000379:IPR000734 COGs COG0657.
  
    0.774
RPA2632
ABC transport permease protein, possibly for nitrate.
 
  
 0.761
RPA2498
Possible ABC transporter, permease protein.
 
  
 0.750
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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