Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2679Putative transport system ATP-binding protein. (272 aa)    
Predicted Functional Partners:
RPA2678
Putative permease protein, subunit of ABC transporter.
 
 0.974
RPA2677
Putative substrate-binding protein, subunit of ABC transporter.
 
 
 0.947
RPA3707
Possible nitrate transporter component, nrtA.
 
 0.925
nosF
Putative NosF protein (an ABC transporter).
 
    
0.903
RPA4162
Putative taurine ABC transport system permease protein.
 
 0.903
RPA1363
Sulfate ester transport system permease protein.
 
 
 0.879
RPA3383
Possible taurine transport system permease protein.
 
 
 0.879
nrtB
Possible nitrate transport system permease protein.
 
 
 0.876
RPA0468
Putative ATP-binding protein of ABC transporter.
 
 0.874
nrtA
Putative nitrate transporter component, nrtA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.871
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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