Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2718Hypothetical protein; COGs COG0630. (187 aa)    
Predicted Functional Partners:
RPA2717
Conserved hypothetical protein.
  
    0.741
RPA2716
Conserved hypothetical protein.
  
    0.700
RPA2719
Conserved hypothetical protein; COGs COG2346.
       0.648
RPA1481
Response regulator receiver (CheY-like protein).
   
    0.550
RPA3311
Glycosyl hydrolase; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.528
glgA1
Putative glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.524
RPA3646
Putative maltooligosyltrehalose trehalohydrolase.
   
  
 0.486
glgX
Probable glycosyl hydrolase; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.429
RPA3643
Putative trehalose synthase.
   
    0.413
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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