STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mexD2-2RND multidrug efflux transporter MexD. (1043 aa)    
Predicted Functional Partners:
mexC2
Putative RND multidrug efflux membrane fusion protein MexC precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.995
mexA
Putative RND multidrug efflux membrane fusion protein MexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.992
mexC1
Putative RND multidrug efflux membrane fusion protein MexC precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.984
mexC3
Putative RND multidrug efflux membrane fusion protein MexC precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.984
RPA1810
Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.927
RPA2581
Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.927
mexE
Pseudogene of RND multidrug efflux transporter MexF; Signal predicted by SignalP 2.0 HMM (Signal peptideprobabilty 0.820) with cleavage site probability 0.388 atresidue 29; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.918
oprN
Putative outer membrane efflux protein OprN precursor.
 
 0.875
RPA0095
Putative multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.847
mex
Possible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.846
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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