STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2753Conserved hypothetical protein. (397 aa)    
Predicted Functional Partners:
RPA2754
Polysaccharide deacetylase.
 
  
 0.873
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
   
 0.807
RPA4581
Conserved hypothetical protein.
 
  
 0.789
RPA0880
Hypothetical protein; InterPro IPR000694.
 
    0.788
RPA4205
Possible polysaccharide export protein, PST family.
 
    0.771
RPA4785
Polysaccharide deacetylase.
 
  
 0.771
RPA3957
Hpt domain.
  
   
 0.768
RPA1508
Conserved hypothetical protein.
  
    0.767
RPA3420
Conserved unknown protein.
  
     0.763
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.763
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.