Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nthBPutative nitrile hydratase beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family. (218 aa)    
Predicted Functional Partners:
nthA
Nitrile hydratase alpha subunit; Citation: Payne et al. (1997) Biochemistry 36:5447-5454.
 
 
 0.999
RPA2807
Conserved hypothetical protein.
 
   
 0.967
RPA4166
Putative nitrilase.
   
 
 0.916
RPA1563
Putative nitrilase.
   
 
 0.915
RPA3628
Possible amidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the amidase family.
    
 0.909
RPA1700
Putative amidase; Belongs to the amidase family.
    
 0.906
RPA1734
Putative amidotransferase, subunit A; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.906
RPA3440
Probable amidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.906
RPA1639
Possible oxalate/formate Major Facilitator Family (MFS) antiporter.
  
     0.594
RPA1778
Putative Glu-tRNA amidotransferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.569
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (42%) [HD]